ugh bad save

So I restarted this and was playing along. Doing the mission where you have to recover the archives (in the first set). I'm in the second part, I saved the game in there and accidentally got my main character SMG'd after killing the target. SO i reloaded, took out several guys and was jsut about to move in on the target. I thought "Why not save?". So I quickly saved my game, 2 seconds later it gives me the message saying objective failed, he made it to the exit. I reload, goto combat time. No dice, 1 turn and objective failed. I'm nowhere near him.

What a joke. I normally alternate my saves, but for some reason didn't feel the need this time so I have to play the entire mission over again.

Problem with Mission

So I'm doing the mission where you have to attack the factory where you first fight against PKs and can't kill any civs.

Problem is. PKs are all down, no enemies left and I can't find the objectives. The owner of the factory is nowhere to be found and I can find no shipping documents. I tried using the cheat_showall command to see if he was hiding somewhere weird and upon turning it on, no icons pop up as a special person. I also can't see anyone revealed by that that I cannot otherwise see. I've run my scout into every room and look around and nothing. I've had him open every container he can and no documents anywhere.
I've blown up part of the building but no civs died. There are 2 PKs that are "stuck" in weird positions so I can't haul the bodies out of them (trying to blast them out resutls in the building going up) , but as I recall it should have still showed if they were either of the special people.

anything here that can help me out, or is something messed up? I have the patch.